rs31264483 SNP Detail

Summary

• ID
  rs31264483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156764657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTC TGAAGTGGAG AGACTAATGC
  Y
  TGCGTAGGGT AAATACTTTT AAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
ss49720039	NES13066419	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C		T	T	C
ss145809504	ENSMUSSNP5310548	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
rs31264483					SNP	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720039	NES13066419	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156764657 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			1707 bp upstream
Cpgi904	CpG island 904			1623 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			1725 bp upstream
Rr421284	regulatory region 421284			400 bp proximal
Rr421285	regulatory region 421285			1294 bp proximal
Rr421286	regulatory region 421286			1721 bp proximal
Rr421287	regulatory region 421287			1883 bp proximal
Tssr14474	transcription start site region 14474			749 bp downstream
Tssr14475	transcription start site region 14475			1695 bp downstream
Tssr14476	transcription start site region 14476			1724 bp downstream