rs31264544 SNP Detail

Summary

• ID
  rs31264544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156570345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCACAGAG ATGTGCTGTC
  TCTGGTGTGC TCCACTACCA TCTGACTTGT TTGATCGTTT TTTAACATTT AATGTCTCTC
  TGTGTGTGCA CACGTGTGGG AAGACAGTTG TTTCCCTCCT TCCACCTTTC CATGGTTTCC
  CAGGATAGTG GGTGGGAAGT GTTTTTATCC ACTGAGCCGT GACTACAGGG GACTCAGCCT
  Y
  GGGTGTTGCT GGTGTCCCGG CTTAAGGCAG ACCTTAGCTC TGGGCTTTCC CTATACCAGA
  AGGCAAGCGG TGCTAATCCA ATGGCTAGCC AGGTGCCTAG CCACACACAT CTTTTTGGAA
  GGGAAACACC TAGAGGCCTA TCAATCAAAT AAGTGTGTCA CTGGCCCATG TGCCTTCTGG
  CTTCTGAGCC TCTAGATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49721020	NES13072077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31264544					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721020	NES13072077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156570345 () rs orientation: forward

Symbol	Name	Function Class
Gm39683	predicted gene, 39683	1629 bp upstream
Gm69913	predicted gene, 69913	682 bp downstream
Rr421237	regulatory region 421237	130 bp distal
Rr421238	regulatory region 421238	1135 bp proximal
Rr421239	regulatory region 421239	1492 bp proximal
Rr421240	regulatory region 421240	1819 bp proximal