rs31264546 SNP Detail

Summary

• ID
  rs31264546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156569936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAAATGC TCTCTGAGAC
  TGGGAACAGG TGGCTTCCTT AGGTCAGAGG GACCAATAGT GAGGGTGAGG GTCTTCAGCT
  TGTGGTGTGG TGGATCACAT GGCTTTCCTG AGCTGAGCCA CAGGGGCAGT ACAGGTGCAG
  CATGGGCTAG CTCTGTCCAC CCTCACCTGG GCTGCCACAG AGCAAGCAGG AGGTCTGTCA
  Y
  AATAGGGAGG AAGACTGAAA TATGCAGCTG TAGGCCCCTC TAGTATACAT GGGGTCCTAG
  TCTACCACAG ACTCTTGCTG GTCCTGTTTG TTTGATTTTT GTTTTGCTTT ATTTTGGGTT
  CTTTAGGGGA GTGGGGAGTT CGAGACAGGG TTTCTCTGTG TAGCCCTGGC TGTCCTGGAA
  TTCACGCTGT AGACCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49721022	NES13072120	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31264546					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721022	NES13072120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156569936 () rs orientation: forward

Symbol	Name	Function Class
Gm69913	predicted gene, 69913	1091 bp downstream
Rr421237	regulatory region 421237	within coordinates
Rr421238	regulatory region 421238	1544 bp proximal
Rr421239	regulatory region 421239	1901 bp proximal