rs31264547 SNP Detail

Summary

• ID
  rs31264547
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156569593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACACTCT ATGTTCGGGA
  CATACCTCTC AAGGTGGCCT AAAGAGTGAG AAACATACAC AGCTCCCTCT CAGCCTATCA
  AAATCCATTG TGTGCTTTGA GCACATCTTG AAGCTACCTG TCCATCAAAC ACAGCTGCCC
  ACCTCCTAGA TGTGCTCAGG TGGTCCGTGA AATCATGGTC CTGCTCAGAC TTGAAACTAT
  S
  GGAGGAGACA GTAAATTTTC CCCCTCTCCC GTTGCACTTC TACATATGGC CACATGGGGT
  CAGTGTCCTC TTAGGCCTGG CCAGGAGATC TGCAATGGGA CTCAAAGCTT TCTCTAAAGT
  CTTTTTGTAG AGTTGAAATA ACTGCAAAAT GCTCTCTGAG ACTGGGAACA GGTGGCTTCC
  TTAGGTCAGA GGGACCAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49721024	NES13072116	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31264547					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721024	NES13072116	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156569593 () rs orientation: forward

Symbol	Name	Function Class
Gm69913	predicted gene, 69913	1434 bp downstream
Rr421237	regulatory region 421237	within coordinates
Rr421238	regulatory region 421238	1887 bp proximal