rs31265019 SNP Detail

Summary

• ID
  rs31265019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52649612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTTTAC AGATATCTGT
  AAAATTGACA AAAGAAGTTT TCTTGGTTCC TACTCGGATG ACCTGTGGAG GTTTCATAAC
  AAATTTCCTC TTCTCTCCAG CAACCATATC TGGATTCTTT TCTCTCATGA TGTTTAACAC
  TCGGTTCAGC AACTCCTCAT ATGTGTAGTC TCTTTCTGAG CCTGCCCAAG CAGTTTGGCT
  R
  CTGAATGAAA TGCCATCATC TTTTTTGCTG TCTTCATCTT CTAAAGCTTC GTCTTTTTCT
  AGTATTTCAT CTTCTTCTGG GAATTTAACA TTCTTCTTTT TCTTTTTTTT GTTGCCAAGC
  ATAATGTCAA GGTAATCCTC TGGCTCGGCT GGCTCTTGAG CATCACTCTC AATCTTAACA
  TCCTTTATAG CTTCTTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss47534729	NES11465136	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs31265019					SNP	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47534729	NES11465136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52649612 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	within coordinates
Gm64848	predicted gene, 64848	423 bp downstream
Rr663484	regulatory region 663484	480 bp proximal
Tssr81291	transcription start site region 81291	289 bp downstream
Tssr81292	transcription start site region 81292	462 bp downstream
Tssr81293	transcription start site region 81293	557 bp downstream
Tssr81294	transcription start site region 81294	571 bp downstream