rs31265022 SNP Detail

Summary

• ID
  rs31265022
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52649746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GCCAAGCATA ATGTCAAGGT
  M
  ATCCTCTGGC TCGGCTGGCT CTTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss46277994	mCV23398936	ABI	CRAMUS_MOUSE	r	SNP	G					T
ss47534732	NES11465137	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A		C	A	A	C
ss144869109	ENSMUSSNP6734845	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs31265022					SNP	C	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47534732	NES11465137	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52649746 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	within coordinates
Gm64848	predicted gene, 64848	289 bp downstream
Rr663484	regulatory region 663484	346 bp proximal
Tssr81291	transcription start site region 81291	155 bp downstream
Tssr81292	transcription start site region 81292	328 bp downstream
Tssr81293	transcription start site region 81293	423 bp downstream
Tssr81294	transcription start site region 81294	437 bp downstream