rs31265466 SNP Detail

Summary

• ID
  rs31265466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156820935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGCATCC TTCATACTAT
  CTCTTCACCA TCACCTATCT GATTCCAGTT TGTCCAAAGT GGTAATAGCC TAGTTCAAAA
  ACCAGGCACA GAGGGCTGGG ACCACGACTC ACTCAGTGGG AAAGGAAGCT CGCTGCTGAG
  TCATCAGAAC CCACATCATA GAAGCAGGGG AAAAATATTC TGATTTCCAT GGGTATGTCA
  Y
  GGCACACATA GCAATATACA AACATACATA GACACAGATT GAGGAGGGGC AGACATGGCA
  CGAGGGCAAA AAAAAAGTAA AAAAGCATAC AAATAAAAAG TCTCAAAGAG TCAAAACATT
  AACATAAGGC CAAGAGAAGA TAAAAAGTAG GGGTAAGGGG CTATAAATGA AACTAGTGAT
  GGACACCACA CACATGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49719806	NES13064742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31265466					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719806	NES13064742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156820935 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm70243	predicted gene, 70243	406 bp upstream
Rr372293	regulatory region 372293	351 bp upstream
Rr421298	regulatory region 421298	1840 bp distal
Rr421299	regulatory region 421299	1684 bp distal
Rr421300	regulatory region 421300	342 bp distal
Rr421301	regulatory region 421301	577 bp proximal