rs31265469 SNP Detail

Summary

• ID
  rs31265469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156820486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTAACAA GCTAGCTATG AGAAGGGAGC AGGGTTACTC
  TGCTTTGAAA ACTATCCACT TCATTGATCT ACTTGGTAGC TGTTAGAATA CACTAAAATT
  R
  GATAGTGCTG ATTCTGGAAG TCAGGGACAT AGAAACATCT GTTGGTCCCC CATGTCCAAT
  CCCCCTCTTG TTCTCTCTCT GTACAAAGGC TTGATGCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49719809	NES13064739	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31265469					SNP	G	G	G	A	G	G	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49719809	NES13064739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156820486 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm70243	predicted gene, 70243	855 bp upstream
Rr372293	regulatory region 372293	800 bp upstream
Rr421298	regulatory region 421298	1391 bp distal
Rr421299	regulatory region 421299	1235 bp distal
Rr421300	regulatory region 421300	within coordinates
Rr421301	regulatory region 421301	1026 bp proximal