rs31266360 SNP Detail

Summary

• ID
  rs31266360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156667466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTGGAAA AGTAATATTG ATACAAACAA TAATTAAAAC
  CTCCTTCAAG GTCAGGATTG AGACCTGTCA GGGTCACCAG GATTAAGCAT ATGAACTCAG
  R
  AAATGTCAGT ACTGAAGAAA AACTGGCAAG GCCAAAAGCC TGTTTTAAAA AAATAAAAAT
  AAAATAACCT TCCTAACTGT CCCTAAGAGG CAGGAGCATG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49720557	NES13069349	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A	G	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31266360					SNP	A	G	G	G	A	G	A	G	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720557	NES13069349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156667466 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	within coordinates
Gm68672	predicted gene, 68672	1972 bp upstream
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr421263	regulatory region 421263	944 bp distal
Rr421264	regulatory region 421264	696 bp distal
Rr421265	regulatory region 421265	1948 bp proximal
Tssr9579	transcription start site region 9579	984 bp downstream
Tssr9580	transcription start site region 9580	918 bp downstream