rs31266362 SNP Detail

Summary

• ID
  rs31266362
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156667285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TGAGTCTTTG TTAATCTATG
  K
  TATTTCTTGT TATGATTAAT CATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49720559	NES13069345	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	T		G	T	T	T	G	T
ss145806735	ENSMUSSNP2420922	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31266362					SNP	T	T	G	G	T	T	G	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720559	NES13069345	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156667285 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	within coordinates
Gm68672	predicted gene, 68672	1791 bp upstream
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr421263	regulatory region 421263	763 bp distal
Rr421264	regulatory region 421264	515 bp distal
Tssr9579	transcription start site region 9579	803 bp downstream
Tssr9580	transcription start site region 9580	737 bp downstream