rs31266384 SNP Detail

Summary

• ID
  rs31266384
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38938945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGG TTGGTGGTGT GTGACACTTT
  W
  AAAAAATCAA ATTTAAACTG CATTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45515920	mCV25414918	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss134846123	ENSMUSSNP2757951	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320724089	CHEV_3_38783718	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31266384					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38938945 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	186 bp proximal
Gm56780	predicted gene, 56780	893 bp upstream
Gm65329	predicted gene, 65329	within coordinates
Rr575715	regulatory region 575715	1479 bp distal
Rr575716	regulatory region 575716	1771 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	302 bp distal
Rr575719	regulatory region 575719	740 bp proximal
Rr575720	regulatory region 575720	1306 bp proximal
Rr575721	regulatory region 575721	1654 bp proximal
Tssr28930	transcription start site region 28930	516 bp upstream
Tssr28931	transcription start site region 28931	887 bp upstream
Tssr28932	transcription start site region 28932	914 bp upstream
Tssr28933	transcription start site region 28933	946 bp upstream
Tssr28934	transcription start site region 28934	1047 bp upstream
Tssr28935	transcription start site region 28935	1080 bp upstream
Tssr28936	transcription start site region 28936	1092 bp upstream