rs31267834 SNP Detail

Summary

• ID
  rs31267834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156666102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGTGTA TTCCAGGCTG
  GCCTCAAGTT CATAGGGATT CAACTGCCTT CCGAGTGCTG AGATTAAAGG TCAAGCTAAT
  AAAAGCAATT TTCTCTTAAA CATTACACAA TTACTTACAA TTTTAAGCGT CCCGGAGGCT
  GTCAGAATAG CACTGTTAGG TGGCTGCTTC TGGGGAAAGT CTAGCTCCTT ACAGCCTGCA
  R
  CTACTTCTAA AGTGGATTTC TTTTCTTTTC TTTTCTTTTC TTTTCTTTTC TTTTCTTTTC
  TTTTCTTTTC TTCCTTTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTT CCAACTCAAA
  AGCTCTGTGG CAGGCAGACT AAAATGTTTA TTTTATAATT GCCTGCTGAA CTATGATAGC
  CTGTTTCCAG ATGGTGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49720571	NES13069326	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31267834					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720571	NES13069326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156666102 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	393 bp upstream
Gm68672	predicted gene, 68672	608 bp upstream
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Tssr9579	transcription start site region 9579	371 bp upstream
Tssr9580	transcription start site region 9580	383 bp upstream