rs31267839 SNP Detail

Summary

• ID
  rs31267839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156664608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA GTACAGCCTC ATAGACCCTC
  W
  TGGCTGTTGA CATAGTAACC ACCAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49720576	NES13069448	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	A	T	A	A	A	A
ss145806652	ENSMUSSNP6700133	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31267839					SNP	A	T	A	T	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720576	NES13069448	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156664608 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	1887 bp upstream
Gm28693	predicted gene 28693	1099 bp upstream
Gm68672	predicted gene, 68672	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr421263	regulatory region 421263	1157 bp proximal
Rr421264	regulatory region 421264	1915 bp proximal
Tssr9579	transcription start site region 9579	1865 bp upstream
Tssr9580	transcription start site region 9580	1877 bp upstream