rs31268198 SNP Detail

Summary

• ID
  rs31268198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52650912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAGGAT GGAGGAATTT
  GACAGTATAG ATATGTCACT AGTGGTGAGA ATTTTTCCTT TATATGGGAC CAGTTTCCTA
  TTGACTTCTT TTTGTTTCCT GGTTTATCAC CATTAAATAG TTATTCAGCT CCCTTGCCCC
  ATGCACTTCT CCCAAACACA GACAGAGCTA TTCTGTTTTA TCCTTCATTC TCCGATGGGA
  Y
  TGAAAGCCCT TAGATGTCAT GAGCCAAAAT AAAAATTTTC CTCTCACAAA TTATTTCTGT
  TGAGAATTTG CTCAGGTGAA CCAAATGTAA CTGATGGAAT TTGCCATTGT GATGGATAAA
  GTTGATTGTA TACCTAACCA AACCAATAAT CTCAAGGAGA CAAGACTCTC AAGATGCTTT
  CTGGGGTATT GAATTGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47534768	NES11465162	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31268198					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47534768	NES11465162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52650912 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	821 bp upstream
Gm64848	predicted gene, 64848	within coordinates
Rr663484	regulatory region 663484	660 bp distal
Tssr81291	transcription start site region 81291	979 bp upstream
Tssr81292	transcription start site region 81292	806 bp upstream
Tssr81293	transcription start site region 81293	733 bp upstream
Tssr81294	transcription start site region 81294	686 bp upstream