rs31268277 SNP Detail

Summary

• ID
  rs31268277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79748360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATAAAT ATCTATACCA
  TCAATTTTTA AAAATGAAGA TAAAAGATGA TCTTGCAAAA TCCAACCTCA CCAGCAGTGT
  GGTTCAAACG GCAGCTTACA GAAGAGTACA AAGTCGGCAG GTAGACATCC CTGCTGTGCA
  CTCTGGGAGC ACCAAGTCGC ACAAAGTAAC TAACCTTTCA ATACAATTAT TCAGGTCAAG
  R
  CAAGGAAAGA AATCAGGTCT TCAGCTAAAT TATATTTTAA GTACTCAGTT GACGAAGGTG
  TCCATCAGCC AAGATTCTGA TCCCTGCAAA TTTAGAATTT TCTGTCACTG TAAAAAGTTC
  TATCAGATAT CATTGCTACA AAAAAAGTTC TGGCTCTCTC AGTGAAGAAA AGAGGAATGT
  GGTATCAGGA AAGATCCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47034590	NES10771011	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31268277					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034590	NES10771011	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79748360 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13278	CpG island 13278			1572 bp proximal
Gm64378	predicted gene, 64378			1712 bp upstream
Rr397727	regulatory region 397727			1168 bp upstream
Rr578586	regulatory region 578586			427 bp proximal
Rr578587	regulatory region 578587			666 bp proximal
Rr578588	regulatory region 578588			1616 bp proximal
Rr578589	regulatory region 578589			1723 bp proximal
Tmem144	transmembrane protein 144			Intron
				Noncoding-Transcript-Variant
Tssr29591	transcription start site region 29591			1706 bp upstream
Tssr33748	transcription start site region 33748			1589 bp downstream
Tssr33749	transcription start site region 33749			1804 bp downstream