TAAAAATGAA GATAAAAGAT GATCTTGCAA AATCCAACCT CACCAGCAGT GTGGTTCAAA CGGCAGCTTA CAGAAGAGTA CAAAGTCGGC AGGTAGACAT CCCTGCTGTG CACTCTGGGA GCACCAAGTC GCACAAAGTA ACTAACCTTT CAATACAATT ATTCAGGTCA AGACAAGGAA AGAAATCAGG TCTTCAGCTA R ATTATATTTT AAGTACTCAG TTGACGAAGG TGTCCATCAG CCAAGATTCT GATCCCTGCA AATTTAGAAT TTTCTGTCAC TGTAAAAAGT TCTATCAGAT ATCATTGCTA CAAAAAAAGT TCTGGCTCTC TCAGTGAAGA AAAGAGGAAT GTGGTATCAG GAAAGATCCT TGGCACATAC CAACAGCCCC AGCACTTGGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47034592 | NES10771012 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | G | A | A | A | G | A | G | A |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs31268279 | SNP | A | A | A | A | A | G | A | A | A | G | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47034592 | NES10771012 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:79748388 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13278 | CpG island 13278 | 1544 bp proximal | ||||||
Gm64378 | predicted gene, 64378 | 1684 bp upstream | ||||||
Rr397727 | regulatory region 397727 | 1140 bp upstream | ||||||
Rr578586 | regulatory region 578586 | 399 bp proximal | ||||||
Rr578587 | regulatory region 578587 | 638 bp proximal | ||||||
Rr578588 | regulatory region 578588 | 1588 bp proximal | ||||||
Rr578589 | regulatory region 578589 | 1695 bp proximal | ||||||
Tmem144 | transmembrane protein 144 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Tssr29591 | transcription start site region 29591 | 1678 bp upstream | ||||||
Tssr33748 | transcription start site region 33748 | 1561 bp downstream | ||||||
Tssr33749 | transcription start site region 33749 | 1776 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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