rs31268409 SNP Detail

Summary

• ID
  rs31268409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16049372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT TTTTTTCTTT TGTTTTTTCG
  R
  GACAGGGTTT CTCTGTGTAG TCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46014342	mCV22939417	ABI	CRAMUS_MOUSE	f	SNP	G	G		A	G
ss148383656	ENSMUSSNP4748650	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss322110013	CHEV_7_16900796	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31268409					SNP	G	G	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16049372 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18373	CpG island 18373	935 bp distal
Rr167075	regulatory region 167075	571 bp distal
Rr380460	regulatory region 380460	within coordinates
Tssr64601	transcription start site region 64601	1772 bp downstream
Tssr64602	transcription start site region 64602	154 bp upstream
Tssr70736	transcription start site region 70736	1460 bp upstream
Tssr70737	transcription start site region 70737	1398 bp upstream
Tssr70738	transcription start site region 70738	1384 bp upstream