rs31268443 SNP Detail

Summary

• ID
  rs31268443
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32736142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGC AAGTGTCAAG GCACGGATTG
  K
  TTTCTTGTCG AGCTCTGTGG TCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45013641	mCV23043378	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss146334630	ENSMUSSNP4974614	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325792475	CHEV_19_32833232	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31268443					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32736142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	232 bp distal
Gm36566	predicted gene, 36566	1330 bp upstream
Gm56643	predicted gene, 56643	1329 bp upstream
Gm58496	predicted gene, 58496	1082 bp downstream
Gm58497	predicted gene, 58497	901 bp downstream
Pten	phosphatase and tensin homolog	within coordinates
Tssr5485	transcription start site region 5485	1242 bp downstream
Tssr5486	transcription start site region 5486	1047 bp downstream
Tssr5487	transcription start site region 5487	1007 bp downstream
Tssr155992	transcription start site region 155992	1155 bp downstream
Tssr155993	transcription start site region 155993	1105 bp downstream
Tssr155994	transcription start site region 155994	1083 bp downstream
Tssr155995	transcription start site region 155995	331 bp downstream
Tssr158899	transcription start site region 158899	1404 bp upstream
Tssr158900	transcription start site region 158900	1359 bp upstream