rs31268824 SNP Detail

Summary

• ID
  rs31268824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156607408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAGAGGA AGGTGGAGTT
  CTGCTCTGGG TGCCCCAATG AACATCTTTT AAGTGGGCAG TAATTCACAC CCCCATCCCT
  CCATAAACTC ACTAACAACT TACTTCATAG CCATTTGCTT TGTTGGAGAA GATTGAGGGC
  ACAAAGGGGA ATCTGCAAAT GAATTAAAAT CCCTCTTAAT GCTGTCACTC AGAGACAGTC
  Y
  GTGAATGTAT TCGTGAATGT GTTCCCCATT TAAAAAGTGT GAATGTAATT AAAAAAAAAA
  AAGGAATAAA GCCTAAGTCT TTGTATGGCT TCTGCCACTT GGCTGGACCG CAGCTCAGTT
  CAGATAGGAT CTCTGAGGCC TGGATACCAG GCATCAGTGT GCTTTAAAGT TTCTCTGTGG
  TTCTGAGAAC GGGTGCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49720873	NES13071129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31268824					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720873	NES13071129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156607408 () rs orientation: forward

Symbol	Name	Function Class
Gm71086	predicted gene, 71086	within coordinates
Rr421254	regulatory region 421254	1529 bp distal
Rr421255	regulatory region 421255	686 bp distal