rs31268833 SNP Detail

Summary

• ID
  rs31268833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156606309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTTTG TTTGTTTTCG
  AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT CACTTTGTAG ACCAGGCTGT
  CCTTGAACTC AGAAATCCGC CTGCCTCTGC CTCCCAAGTG CTAGGATTAA AGGCATGCGC
  CACCACTTTG TACAATCTCT ACCATCTCTC CTGACTCCCA GCTCAGAGAA AGCAGATGGT
  R
  CAGGTATGCT TCTGAAAGAA ATTGTGGGGT GTGTGTGTGT ACATAGTACA ACCCCAAATA
  CACATACAAA CTACTTGGGA GTATTATACA GAGCTGCACA CATGTACGGA ATCTAAATGA
  TTGGTTCACT GTTTAACTCA ATCACTGAAT GCCAGGAAAA TGGCAGGCAG TGTGGATGGT
  GCAAGAATTT AGGTTCCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49720882	NES13071117	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31268833					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720882	NES13071117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156606309 () rs orientation: forward

Symbol	Name	Function Class
Gm71086	predicted gene, 71086	within coordinates
Rr421254	regulatory region 421254	430 bp distal
Rr421255	regulatory region 421255	176 bp proximal