rs31269054 SNP Detail

Summary

• ID
  rs31269054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126934100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA AAGTAGCTAA TACAGCATGC
  Y
  TGTATCTGCT TATGCAGTAG GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46014405	mCV23676611	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss145879569	ENSMUSSNP121194	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss322451448	CHEV_7_134478442	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31269054					SNP	T	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126934100 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69201	transcription start site region 69201	1347 bp downstream
Tssr69202	transcription start site region 69202	1303 bp downstream
Tssr69203	transcription start site region 69203	1261 bp downstream
Tssr69204	transcription start site region 69204	1093 bp downstream
Tssr69205	transcription start site region 69205	180 bp downstream
Tssr74988	transcription start site region 74988	193 bp downstream