rs31269678 SNP Detail

Summary

• ID
  rs31269678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156605755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACAGGT TTAGTCATTG
  CCTTATGAAA GATTTAAGGA CAAAGAGGAT CCGCTGGCTG GGGAGTCAGA AGGCAGTGGC
  TTTGCATTTC CAGCTGGTTC CACTCTGCCC CCTTGGCTGC CCTCCCCTCC AAGGCTTAAT
  TAAAGTGGAA AGGATTAATG GGTTTCTGGT CTCTTTGGAG GCTGCAGAGG CTGAAAACCT
  W
  CAAGTCTGTC TGTGACCTCT TTAGAAACAA CAATTTAGAT GACTGTATGG CCCAGAGTAG
  CAGGTCCTCG AAGGGCGTGG CTTCTACTCC ATATCTCCTG GTTTGAGAAT CGAGAAAGAT
  AGGACTTGAA GGGGCTGACA ATCCCATTTC TTTGTGGGCC ATAGCCCAGC ACACACTCTT
  AAGTCAAGCC TGAGGGAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49720887	NES13071159	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A	A	A	A	T	A	T	T	A	A
ss145804840	ENSMUSSNP2494663	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31269678					SNP	T	T	A	A	A	T	A	A	A	A	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720887	NES13071159	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156605755 () rs orientation: forward

Symbol	Name	Function Class
Gm71086	predicted gene, 71086	within coordinates
Rr421253	regulatory region 421253	1801 bp distal
Rr421254	regulatory region 421254	within coordinates
Rr421255	regulatory region 421255	730 bp proximal