rs31269680 SNP Detail

Summary

• ID
  rs31269680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156605556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATATA TATATATATA
  TATATATATA TATATATATA TATATACATA TATATATATA TATGTATGGA GTCTGGGGGG
  GGGTCATCGT TAAGTCAGAC TGAGTGGAAG GATTACATGA GAATGGTCAA CAGATGAACC
  AGGGAGGGAT CCCTTTTCCT GCTATTTGAC CGAAGACATG CTTGATCAGC AGAGACAAGA
  R
  CCACAGGTTT AGTCATTGCC TTATGAAAGA TTTAAGGACA AAGAGGATCC GCTGGCTGGG
  GAGTCAGAAG GCAGTGGCTT TGCATTTCCA GCTGGTTCCA CTCTGCCCCC TTGGCTGCCC
  TCCCCTCCAA GGCTTAATTA AAGTGGAAAG GATTAATGGG TTTCTGGTCT CTTTGGAGGC
  TGCAGAGGCT GAAAACCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49720889	NES13071157	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31269680					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720889	NES13071157	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156605556 () rs orientation: forward

Symbol	Name	Function Class
Gm71086	predicted gene, 71086	within coordinates
Rr421253	regulatory region 421253	1602 bp distal
Rr421254	regulatory region 421254	within coordinates
Rr421255	regulatory region 421255	929 bp proximal