rs31270576 SNP Detail

Summary

• ID
  rs31270576
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156604234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCCCAG TTGAGGGAAT
  TATCCTTAAA ATCATCTTCC ATGTGGAAAG TAAGAGTCAG AGATTGATGG AGCTGGTGAC
  AGAGCTTGTA AGTGCTGGAG CTGAAATTTA AACACATCTC TCAGAGTGGG GGGTATGATC
  CTGCCTTCCT GTGACTATAA AGAACAATCT TTCATCTGAC TGTAAAACCC ACAGTTTAAC
  K
  TGGACTGTCT ATGGACAAGA GACAGATATA GTATTGTTCC TTACCAAAAG TAGGAGATGC
  CATTCCTGGG ACATTTCCTT CATTCTGTCA TCCGAAGGAT AAACCCAGCA TAGCATAGAC
  CAGCTACTAA CAGGCTGAAT CCCCTTGGCC TGGTTTTTCT CTCTGCAGCC TGTCTTCCTC
  CACCCCCACT GTAGCTGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49720896	NES13071193	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31270576					SNP	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720896	NES13071193	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156604234 () rs orientation: forward

Symbol	Name	Function Class
Gm71086	predicted gene, 71086	within coordinates
Rr421253	regulatory region 421253	280 bp distal
Rr421254	regulatory region 421254	1255 bp proximal