rs31270887 SNP Detail

Summary

• ID
  rs31270887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79749249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCATTTC CAAAAGCACA
  TGATCTAATT CCCTGTGAAC CAACAATCCC AGACTGCCAT AAGGAAGAGT CCATCTCGCG
  TTAAATCAGT GACATTTCTG TGGTAAAGAG AAGCATCATT ACTTTACTGA ACATGTATCC
  CCAACCCTTT TTTCGCACAA ACCTAGCCCC AAATTATTCC TCTAAAAATC TTATTTTCAG
  Y
  CTAGGTTGGT AGCAAGCTAA CTTCCGGCAC TCAGAAGGCA GAAGCAGGAA GATCTTTGAG
  ATCATCGCCT GCTTGGTTTA CATAGCTAGT TCCAGACCAT CCAGGACAAC ACTAGTGTGA
  CCCTGTCTTT AAAAAAGCAA GCAAGCAAAC AAAATCCATT ATTATTATTA TTATTATTAT
  TATTATTATA TTTTTTAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47034620	NES10771044	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31270887					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034620	NES10771044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79749249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13278	CpG island 13278			683 bp proximal
Gm64378	predicted gene, 64378			823 bp upstream
Rr397727	regulatory region 397727			279 bp upstream
Rr578586	regulatory region 578586			224 bp distal
Rr578587	regulatory region 578587			within coordinates
Rr578588	regulatory region 578588			727 bp proximal
Rr578589	regulatory region 578589			834 bp proximal
Tmem144	transmembrane protein 144			Intron
				Noncoding-Transcript-Variant
Tssr29591	transcription start site region 29591			817 bp upstream
Tssr33748	transcription start site region 33748			700 bp downstream
Tssr33749	transcription start site region 33749			915 bp downstream
Tssr33750	transcription start site region 33750			1494 bp downstream