rs31270889 SNP Detail

Summary

• ID
  rs31270889
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79749451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGACAACA CTAGTGTGAC CCTGTCTTTA AAAAAGCAAG
  CAAGCAAACA AAATCCATTA TTATTATTAT TATTATTATT ATTATTATAT TTTTTAATAA
  W
  ACGGCATGCT CGGCAAACGC TCTGCTCAGC TATACCCGAA CCCCGTTTTT ACTTTGTTTG
  ATTTGAGACA GTCTCGCCAA GCTTTTCTAG GCAGACTTTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	NZW/LacJ	WSB/EiJ
ss47034622	NES10770949	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	NZW/LacJ	WSB/EiJ
rs31270889					SNP	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034622	NES10770949	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79749451 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13278	CpG island 13278			481 bp proximal
Gm64378	predicted gene, 64378			621 bp upstream
Rr397727	regulatory region 397727			77 bp upstream
Rr578586	regulatory region 578586			426 bp distal
Rr578587	regulatory region 578587			within coordinates
Rr578588	regulatory region 578588			525 bp proximal
Rr578589	regulatory region 578589			632 bp proximal
Rr578590	regulatory region 578590			1923 bp proximal
Tmem144	transmembrane protein 144			Intron
				Noncoding-Transcript-Variant
Tssr29591	transcription start site region 29591			615 bp upstream
Tssr33748	transcription start site region 33748			498 bp downstream
Tssr33749	transcription start site region 33749			713 bp downstream
Tssr33750	transcription start site region 33750			1292 bp downstream