rs31272031 SNP Detail

Summary

• ID
  rs31272031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:64508323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA TGGAGTTCTT TTCACAGTAC
  Y
  CACTTGTACT TTCTCAGTCT CTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss39272227	mCV23558791	ABI	CRAMUS_MOUSE	f	SNP	T	T		C	T
ss62424180	NES17252555	PERLEGEN	MM_PANEL2	f	SNP			T				C	C
ss139627407	ENSMUSSNP643899	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324654913	CHEV_14_64889711	CHEVERUD	SCREENING_POP	f	SNP						T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs31272031					SNP	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62424180	NES17252555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:64508323 () rs orientation: forward

Symbol	Name	Function Class
Gm41176	predicted gene, 41176	within coordinates
Msra	methionine sulfoxide reductase A	Intron
Rr369847	regulatory region 369847	1430 bp upstream
Rr493865	regulatory region 493865	1182 bp proximal
Rr493866	regulatory region 493866	1836 bp proximal