rs31272765 SNP Detail

Summary

• ID
  rs31272765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79784048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATCTGAA CTCAGGTCTT
  TATGCCTGCC CACGCTGTCT CTCCAGCCCC TGTTCTGTAT TACCAGAGGC GTGGGAGAGG
  TGTGTCCTAT TTAGCTTAAA AGCAGCAAAT TACCAGGAAG AAAATGCTAT ACTTTCTGAT
  TCACACTTAA TCTTTTTGTG ACAAAGCTTT CTGATTTCAA TTATATTGCC AAGGCACTAA
  Y
  TGTACCTGTG CAGATTACCA CTAATTACTT ATAATTTTAA AAGGCAAAAA TCACCCATGA
  ATTGAATCCA AAGCAGCATG GAAAATATAC TCCTGATTAT AGGGTATAAT CATGAAGCGA
  CTTCTAGGTA ATGTGTTACA TGAGTAACTT CTGACAACCG TATCATGAAC CTGAAATCGT
  GCACTGATCA TGGGCTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47034916	NES10769037	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31272765					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034916	NES10769037	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79784048 () rs orientation: forward

Symbol	Name	Function Class
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	1599 bp proximal
Tssr29594	transcription start site region 29594	520 bp upstream
Tssr29595	transcription start site region 29595	543 bp upstream