rs31272766 SNP Detail

Summary

• ID
  rs31272766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79784075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCACGCTG TCTCTCCAGC
  CCCTGTTCTG TATTACCAGA GGCGTGGGAG AGGTGTGTCC TATTTAGCTT AAAAGCAGCA
  AATTACCAGG AAGAAAATGC TATACTTTCT GATTCACACT TAATCTTTTT GTGACAAAGC
  TTTCTGATTT CAATTATATT GCCAAGGCAC TAACTGTACC TGTGCAGATT ACCACTAATT
  R
  CTTATAATTT TAAAAGGCAA AAATCACCCA TGAATTGAAT CCAAAGCAGC ATGGAAAATA
  TACTCCTGAT TATAGGGTAT AATCATGAAG CGACTTCTAG GTAATGTGTT ACATGAGTAA
  CTTCTGACAA CCGTATCATG AACCTGAAAT CGTGCACTGA TCATGGGCTT TAGCTATGCC
  TGTCTCCTTA CCATCTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47034918	NES10769038	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31272766					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034918	NES10769038	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79784075 () rs orientation: forward

Symbol	Name	Function Class
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	1572 bp proximal
Tssr29594	transcription start site region 29594	493 bp upstream
Tssr29595	transcription start site region 29595	516 bp upstream