rs31272768 SNP Detail

Summary

• ID
  rs31272768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79784176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTTCTG ATTCACACTT
  AATCTTTTTG TGACAAAGCT TTCTGATTTC AATTATATTG CCAAGGCACT AACTGTACCT
  GTGCAGATTA CCACTAATTA CTTATAATTT TAAAAGGCAA AAATCACCCA TGAATTGAAT
  CCAAAGCAGC ATGGAAAATA TACTCCTGAT TATAGGGTAT AATCATGAAG CGACTTCTAG
  R
  TAATGTGTTA CATGAGTAAC TTCTGACAAC CGTATCATGA ACCTGAAATC GTGCACTGAT
  CATGGGCTTT AGCTATGCCT GTCTCCTTAC CATCTATGTA GAAAGTTTAG CTATTGCAGG
  AAGCGGGAAG AGTGAACAAG CTAACATGCT TCCAATCACT GTGGTAAGTG CTTTACATGC
  AAGGTCTAGT TTTAGAACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47034920	NES10769040	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31272768					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034920	NES10769040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79784176 () rs orientation: forward

Symbol	Name	Function Class
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	1471 bp proximal
Rr578600	regulatory region 578600	1954 bp proximal
Tssr29594	transcription start site region 29594	392 bp upstream
Tssr29595	transcription start site region 29595	415 bp upstream