rs31272980 SNP Detail

Summary

• ID
  rs31272980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149438691 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCCCA AACCCCTTTC AATGAAATTG
  Y
  TCAGGAGGGG AGGCAACTGT AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46506855	mCV23372008	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss134502158	ENSMUSSNP4881123	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G		A
ss325985241	CHEV_X_147090238	CHEVERUD	SCREENING_POP	r	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31272980					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149438691 () rs orientation: reverse

Symbol	Name	Function Class
Rr694335	regulatory region 694335	223 bp proximal
Rr694336	regulatory region 694336	1694 bp proximal
Tro	trophinin	within coordinates
Tssr164370	transcription start site region 164370	783 bp upstream
Tssr164371	transcription start site region 164371	99 bp upstream
Tssr164372	transcription start site region 164372	1427 bp downstream
Tssr164373	transcription start site region 164373	1671 bp downstream
Tssr164374	transcription start site region 164374	1697 bp downstream