rs31273798 SNP Detail

Summary

• ID
  rs31273798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113364114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACGG TGGTAGTACA AGTCACACCA
  Y
  AGGACTGAGG GATCAGTGGT TAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46015199	mCV24770930	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss145682735	ENSMUSSNP7166895	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss322424322	CHEV_7_120908391	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31273798					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113364114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	755 bp proximal
Rr653859	regulatory region 653859	693 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	1121 bp upstream
Tssr68625	transcription start site region 68625	898 bp upstream
Tssr68626	transcription start site region 68626	960 bp upstream
Tssr68627	transcription start site region 68627	1029 bp upstream
Tssr68628	transcription start site region 68628	1148 bp upstream
Tssr68629	transcription start site region 68629	1167 bp upstream
Tssr68630	transcription start site region 68630	1206 bp upstream
Tssr68631	transcription start site region 68631	1242 bp upstream
Tssr68632	transcription start site region 68632	1364 bp upstream