rs31273972 SNP Detail

Summary

• ID
  rs31273972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:40989702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC TACAGAGCAG ACAAGCTGGG
  R
  CTTTGTTGTG AGAATCTGTC TCAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45014311	mCV23121538	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss146399238	ENSMUSSNP3969096	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G		G
ss325808745	CHEV_19_41075749	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31273972					SNP	A	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:40989702 () rs orientation: forward

Symbol	Name	Function Class
Gm59161	predicted gene, 59161	within coordinates
Rr547535	regulatory region 547535	1967 bp distal
Rr547536	regulatory region 547536	1232 bp distal
Rr547537	regulatory region 547537	1450 bp distal
Tssr159239	transcription start site region 159239	772 bp upstream