rs31274585 SNP Detail

Summary

• ID
  rs31274585
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9465614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCAGAG GGCAGTATTT
  GACAAAGGTT TGATAACAAA CATCACTCAT AGAAATTATA TATGCTTCAT TTATTGTATC
  AACAATGTGG TTAGTAGAAA GAGTTTCCTT CCATCCATAC AGTTTCAGAG AGGGAACCTG
  AGCATGCCTT GTTCCTACAG GGCATAAATA GTTCTTTATG CAGTGCATCT TGAGATTTTT
  W
  AAAAAAATGT TTGTTTTATA GCTTTTAAGA TATAAGAAGA AGCAAAGGAA CTCAGAGTTG
  TTACATGGCA CTTTATAGCC TGGATAGAGC CCATTGGCTC ACCAAAAAAA AGCTCAGTTG
  TTCTAATTCA ATCTCCAAAG CGCTGTTTGC CCTTCCTGGG AAACATCCCA ATTTGGCTGC
  ATTCCATATG CTAGAAAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J
ss45515810	mCV23607710	ABI	CRAMUS_MOUSE	f	SNP	T	T	A			T	T
ss60369247	NES15871152	PERLEGEN	MM_PANEL2	f	SNP				T	A			T	T
ss134574440	ENSMUSSNP6646160	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				T
ss320650886	CHEV_3_9400554	CHEVERUD	SCREENING_POP	f	SNP										T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J
rs31274585					SNP	T	T	A	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369247	NES15871152	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9465614 () rs orientation: forward

Symbol	Name	Function Class
Gm55345	predicted gene, 55345	1621 bp upstream
Rr374488	regulatory region 374488	491 bp downstream