rs31274719 SNP Detail

Summary

• ID
  rs31274719
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127574831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAACTGG ATGGATGCAC
  TTTACATTGC TGGTGTTGAG CTTACTATGC TTCTCTTGTG AGAGAACAGG GCCAAGTTAT
  GTATGAGTTG GTTGGTTAAT TTAAAAGAAT TACTAATTCC CCTACCCCCA TCTGTGCTGA
  GGACATTTCC CAGCCCTAGC TGGGGGAAAA CAGCATTTTC TTGAAGTGTG TGGCATTATC
  W
  ATGGGGATTC AAAGTAGCAG ATCTTAAGAA AGAGGCCCTT GTCTCCGTCT AGAATTTTCT
  CCATTGGGAA GGCCTCAGGA TAGGGTTTGG AGAGAGGCTG GAAGCAATTA CCTAATACAT
  TCCAAGAATT TGCATTTGAT GTTAATTTGT TGCCTTATCT GTCCTTTCCT GTTAGCTAAT
  GGTTCCTTTT CCTTGTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46015211	mCV23385158	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					A		A
ss47266813	NES11556380	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A		T	A	A	T	T	A	A	T	A
ss145883399	ENSMUSSNP5204873	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31274719					SNP	T	T	A	A	A	T	A	A	T	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47266813	NES11556380	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127574831 () rs orientation: forward

Symbol	Name	Function Class
Fus	fused in sarcoma	within coordinates
Tssr69330	transcription start site region 69330	1252 bp downstream