rs31275185 SNP Detail

Summary

• ID
  rs31275185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156352383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGACTA TGACATTCGA
  TTTTACATGT ATGAAATTCT GAAAGCCCTG GATTATTGTC ACAGCATGGG GATTATGCAC
  AGAGATGTGA AACCCCATAA TGTCATGATT GATCATGAGC ACAGAAAGCT TCGGCTAATA
  GACTGGGGTT TAGCTGAGTT TTACCATCCA GGCCAAGAGT ATAATGTCCG AGTTGCTTCT
  Y
  GATATTTCAA AGGTCCAGAG CTACTTGTAG ATTATCAGAT GTACGATTAT AGTTTGGATA
  TGTGGAGCTT GGGTTGTATG CTGGCCAGTA TGATCTTCCG GAAGGAGCCA TTTTTCCATG
  GACATGACAA TTATGATCAG TTGGTGAGGA TAGCCAAGGT TCTGGGAACA GAAGATTTAT
  ATGACTATAT TGACAAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss49721587	NES13077199	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs31275185					SNP	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49721587	NES13077199	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156352383 () rs orientation: forward

Symbol	Name	Function Class
Csnk2a1-ps3	casein kinase 2, alpha 1 polypeptide, pseudogene 3	within coordinates
Rr372288	regulatory region 372288	1506 bp downstream
Rr421190	regulatory region 421190	676 bp distal
Tssr9569	transcription start site region 9569	706 bp downstream