GGCTT TAAACACTTA AAAAGCAGCA K AGAGCGGGAG AAAGAACCTG CCTTG K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|
ss39271969 | mCV22559875 | ABI | CRAMUS_MOUSE | f | SNP | T | G | G | G | ||
ss147010822 | ENSMUSSNP6408439 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | ||||
ss324857945 | CHEV_14_122507221 | CHEVERUD | SCREENING_POP | f | SNP | G | T | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs31275600 | SNP | T | G | G | G | G | T |
Location: Chr14:122345411 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
A330035P11Rik | RIKEN cDNA A330035P11 gene | 1025 bp upstream | ||||||
Cpgi6888 | CpG island 6888 | 153 bp distal | ||||||
Gm56752 | predicted gene, 56752 | 1065 bp downstream | ||||||
Rr296792 | regulatory region 296792 | within coordinates | ||||||
Tm9sf2 | transmembrane 9 superfamily member 2 | within coordinates | ||||||
Tssr127315 | transcription start site region 127315 | 955 bp downstream | ||||||
Tssr127316 | transcription start site region 127316 | 929 bp downstream | ||||||
Tssr127317 | transcription start site region 127317 | 883 bp downstream | ||||||
Tssr127318 | transcription start site region 127318 | 827 bp downstream | ||||||
Tssr130317 | transcription start site region 130317 | 1072 bp upstream | ||||||
Tssr130318 | transcription start site region 130318 | 1010 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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