rs31275817 SNP Detail

Summary

• ID
  rs31275817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61212484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG CAGATATCTA CCTTCTATGT
  R
  ATTAGAATTT CCTTTTTTCT TTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45014327	mCV23487476	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss146621692	ENSMUSSNP5022823	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss325886303	CHEV_19_61299949	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31275817					SNP	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61212484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11146	CpG island 11146	865 bp proximal
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	mRNA-UTR
Gm56644	predicted gene, 56644	within coordinates
Rr406075	regulatory region 406075	235 bp upstream
Rr406076	regulatory region 406076	1886 bp upstream
Rr550838	regulatory region 550838	within coordinates
Rr550839	regulatory region 550839	74 bp proximal
Tssr157374	transcription start site region 157374	351 bp upstream
Tssr157375	transcription start site region 157375	425 bp upstream
Tssr157376	transcription start site region 157376	467 bp upstream
Tssr157377	transcription start site region 157377	506 bp upstream
Tssr157378	transcription start site region 157378	627 bp upstream
Tssr157379	transcription start site region 157379	660 bp upstream
Tssr160090	transcription start site region 160090	541 bp downstream
Tssr160091	transcription start site region 160091	563 bp downstream
Tssr160092	transcription start site region 160092	690 bp downstream
Tssr160093	transcription start site region 160093	792 bp downstream
Tssr160094	transcription start site region 160094	855 bp downstream
Tssr160095	transcription start site region 160095	941 bp downstream
Tssr160096	transcription start site region 160096	1362 bp downstream
Tssr160097	transcription start site region 160097	1553 bp downstream