rs31275938 SNP Detail

Summary

• ID
  rs31275938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGAGGTC CTGAGTTCGA
  TTCCCAGCAA CCACATGGTG GCTCACAACC ATCTGTAATG GGATCTGATG CCCTCTTCTG
  GTGTGTCTGA TGACAGCTAC AGTGTACTCA CTATATATAT ATCCATCCTT TATAAGCTGG
  CCATGTGGCC CAGGCAGCAG TGTGCTTACC TAGCATGCAT AACATGCATG GGGCTCTAGG
  Y
  TTAATCCCGT GGAGTGTGCC TCTATCAGCA CTCCAAGGAA CATTTTTTTT TTTTTCAAAT
  TTGAAAGAAA AGCCGAAGGG AAGGCAAACT TTAAGTCTTG GCAGCTAGGT GCCCATAGGA
  GAACAGAGAA GAGCTTGGCG GGGGCATGGA GGGAGGCGAT GCTGTTTGAG TTAGGCTGAC
  ATGGAGATCA GCTCTGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46015420	mCV25416645	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31275938					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	822 bp proximal
Gm74022	predicted gene, 74022	647 bp downstream
Rr643435	regulatory region 643435	981 bp distal
Rr643436	regulatory region 643436	115 bp distal
Rr643437	regulatory region 643437	765 bp proximal
Rr643438	regulatory region 643438	1266 bp proximal
Rr643439	regulatory region 643439	1561 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	1317 bp upstream
Tssr64959	transcription start site region 64959	1242 bp upstream
Tssr64960	transcription start site region 64960	1310 bp upstream
Tssr64961	transcription start site region 64961	1449 bp upstream
Tssr64962	transcription start site region 64962	1595 bp upstream
Tssr64963	transcription start site region 64963	1613 bp upstream
Tssr64964	transcription start site region 64964	1649 bp upstream
Tssr71075	transcription start site region 71075	1494 bp downstream