rs31276598 SNP Detail

Summary

• ID
  rs31276598
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119393812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCACAAGC CAAGGTGAGC AGAGGAGAGA GCCCAGCAGG
  CTGGCCCGAA GTCACTTGTG GCTGGGAGTC ACTTTCGCCA GCACCCGAAG GGTCCCTGCC
  S
  AAGGGTAAGG GCTCACCCAC TGACCTCACT CAACTCTGCT CCCTTGGTTG TACCACCTCG
  TCCAGGCTCT CTCCATAGTT TAAAACTGAC TTAGTGTCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46015130	mCV24825128	ABI	CRAMUS_MOUSE	f	SNP		G	C				C
ss47184223	NES11599647	PERLEGEN	MM_PANEL2	f	SNP	G			G	C	C	C	G	C	G	G	G
ss145815746	ENSMUSSNP3361941	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31276598					SNP	G	G	C	G	C	C	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184223	NES11599647	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119393812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	within coordinates
Eri2	exoribonuclease 2	529 bp upstream
Rexo5	RNA exonuclease 5	within coordinates
Rr654660	regulatory region 654660	633 bp distal
Rr654661	regulatory region 654661	569 bp distal
Rr654662	regulatory region 654662	449 bp distal
Rr654663	regulatory region 654663	682 bp proximal
Tssr68757	transcription start site region 68757	837 bp downstream
Tssr68758	transcription start site region 68758	577 bp downstream
Tssr68759	transcription start site region 68759	544 bp downstream
Tssr68760	transcription start site region 68760	432 bp downstream
Tssr68761	transcription start site region 68761	295 bp downstream
Tssr74500	transcription start site region 74500	633 bp upstream
Tssr74501	transcription start site region 74501	597 bp upstream