rs31277966 SNP Detail

Summary

• ID
  rs31277966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163898237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCACCTCTA GCAGCACCCA ATCAGGGCAC AGTGGAATGC
  AGTCACTCCC TGGCCAACTT CAGTTTTACT TCTGCTTGTA CCTTCACCTG CTCAGAAGGA
  R
  CCAACTTAAT TGGCAAGAGA AAAACTGTCT GCAGATCATC TGGCACCTGG TCTAGTCCTA
  GTCCAATATG TCAGCATGAG TAATTTTACT CAGAAATAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45015193	mCV22933096	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss60338786	NES15834961	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	G	A	A	G	A	A	G	A
ss145971397	ENSMUSSNP3653461	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31277966					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60338786	NES15834961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163898237 () rs orientation: forward

Symbol	Name	Function Class
Gm57120	predicted gene, 57120	within coordinates
Rr396477	regulatory region 396477	535 bp upstream
Rr396478	regulatory region 396478	1526 bp upstream
Rr422139	regulatory region 422139	1011 bp distal
Rr422140	regulatory region 422140	250 bp proximal
Sell	selectin, lymphocyte	within coordinates