rs31278641 SNP Detail

Summary

• ID
  rs31278641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127311036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGGCC AGTTGGTGAG
  CCTTGCAGTT TCTTCAGGAT TAAACTACAG CTGCTGGTTT GTGCATGGCG TCTGCCTGCC
  TAGAGGACTG GACTGTAGCT GCTGAGTGTT TGGTGTTTGC TATGGGACTG AACTGCTGAC
  AAAGGAGACC AAGCTTGCCC CCCAAAGAAC TATTGCTGAG AAGGTCCACC TCCCCCATAT
  Y
  CTAACAACTT TTCTCTTCCA CTGCCTCTCA TGGGTGGTGG GCAAGAGGAG AGGTTAAACG
  TTTATTAAAA GTAGGTTGCA AAAAGAAAAA AAATATATGC CTATACTCCT TCATCTGACG
  CCTCATCATC TGGGTCCTCT CTGTGCCAGA GCCAAAGACA AGAGTAGGTG CTTGGGAACC
  AATTATAGAG GCAAGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46014774	mCV24290418	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145882044	ENSMUSSNP1005453	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31278641					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127311036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19761	CpG island 19761	1199 bp proximal
Ctf1	cardiotrophin 1	872 bp upstream
Tssr69270	transcription start site region 69270	845 bp upstream