rs31279389 SNP Detail

Summary

• ID
  rs31279389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43115989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGCAGTT CCAGGGTCTT CCCGAAGGCG TCCGAGCGGG
  ACCGGTGCCA TCTACGCTCC TGGTGACTGT CCCCGCCCGC CCGGAGCTCA GCGGCGTCGC
  Y
  GTCACCTGCC TGGCCCGCCA CCTGGTGGCC ACACGTACAT GCACGATCAT CCCGGGTGAG
  AGGGGCTGGG CCTCCTTACT GTCTGTAAGG GAAGTGGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46015511	mCV22871801	ABI	CRAMUS_MOUSE	f	SNP	C	T	C			C	T
ss51478092	NES13969844	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		T	C	C	T	C	T	T	C
ss149073724	ENSMUSSNP4301924	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31279389					SNP	C	T	C	C	C	C	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478092	NES13969844	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43115989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	554 bp distal
Cpgi18933	CpG island 18933	within coordinates
Gm39000	predicted gene, 39000	198 bp upstream
Rr400282	regulatory region 400282	534 bp downstream
Rr645966	regulatory region 645966	1701 bp distal
Rr645967	regulatory region 645967	1036 bp distal
Rr645968	regulatory region 645968	463 bp distal
Rr645969	regulatory region 645969	966 bp distal
Rr645970	regulatory region 645970	274 bp distal
Rr645971	regulatory region 645971	12 bp proximal
Tssr66010	transcription start site region 66010	544 bp downstream
Tssr72135	transcription start site region 72135	975 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates