rs31279404 SNP Detail

Summary

• ID
  rs31279404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45225175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCTCCCA AATGGATTCT GCTTCCCGTA TTTTGCTAGA
  AAACCCCTCC AGTCCCCAGG CCAGAAGCAT GGTGAGCTAA GTCATGAGAA GCAAGGTGTA
  Y
  TCCATAAATA ATCTTTCCAT TGCTCTTTCT TTTTACTCCT GGGCAAACCT TTCTTTCTCA
  GCACACTCTC TTTCTCTGCA TGAAATACAC TTTTTCTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39273320	mCV25250210	ABI	CRAMUS_MOUSE	f	SNP		C	C						T
ss62358702	NES17228874	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	T	C	C	C	C
ss62360100	NES17230344	PERLEGEN	MM_PANEL2	r	SNP	G		G	G	G	G	G		G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31279404					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358702	NES17228874	PERLEGEN	MM_PANEL	f	SNP	C/T
ss62360100	NES17230344	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45225175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	1007 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Gm63525	predicted gene, 63525	1655 bp downstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	477 bp upstream
Rr491040	regulatory region 491040	75 bp proximal
Tssr4380	transcription start site region 4380	1050 bp downstream
Tssr125199	transcription start site region 125199	446 bp upstream
Tssr125200	transcription start site region 125200	474 bp upstream
Tssr125201	transcription start site region 125201	738 bp upstream
Tssr125202	transcription start site region 125202	858 bp upstream
Tssr125203	transcription start site region 125203	935 bp upstream
Tssr125204	transcription start site region 125204	1178 bp upstream
Tssr128221	transcription start site region 128221	1955 bp downstream