rs31279760 SNP Detail

Summary

• ID
  rs31279760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123603408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAAGC TTCAAGTTAT
  TTATGGACAA GATGTGCTGC CTCTCCTTTA AAGTTTGGGG GAGGACACCC AAAGATTAAC
  AAGAGAGGAT GGATTTATCA GGCGGACTTT CTGCAAGGAA AGGGAGCTAA ACTCATTCTG
  AAGCTTCTTG TCCCTCAGGT TTGCTCCCGA AGAACTCGAA GAACTCGGAA GAAGCAACCG
  R
  CATGATGGTC CCTTGTTTTG CAAAGACTCT TGGTTTGCCT ATAGTGCAAT CCTAGCCTAC
  TCCATTAAGA CAGGATGATT TTGACCACTG CCCAGTGGGT GTTAAATGCT TATCACTACT
  TTTCATATTT AGCCCCAGGT ATGTTTCCTG AAAGCTATAG AACCATTTGA TCTCCTGTTA
  TTAGATATGA ACTGTGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45516642	mCV23882596	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		A
ss51028482	NES13904300	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G		G	A	A	A		G	A	A	G		G
ss135773767	ENSMUSSNP2827606	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss320923149	CHEV_3_123512677	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31279760					SNP	G	G	G	A	G	G	G	A	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51028482	NES13904300	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123603408 () rs orientation: forward

Symbol	Name	Function Class
Rr584567	regulatory region 584567	4 bp proximal