rs31280257 SNP Detail

Summary

• ID
  rs31280257
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:144414798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCC AAGCCACAGT GTGACTTGCC
  W
  CCCACCGTCA GCTCAAGCCA GTCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46014974	mCV24316482	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss145992474	ENSMUSSNP3696855	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31280257					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:144414798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20003	CpG island 20003	within coordinates
Cpgi20004	CpG island 20004	1580 bp proximal
Fgf4	fibroblast growth factor 4	325 bp upstream
Rr366757	regulatory region 366757	within coordinates
Rr381621	regulatory region 381621	1992 bp downstream
Rr658729	regulatory region 658729	within coordinates
Tssr70358	transcription start site region 70358	317 bp upstream