rs31281150 SNP Detail

Summary

• ID
  rs31281150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181668390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG GCATGGTGGC TTTAATCCCA
  Y
  TCTTTGGGAG GCAGAGGAAA ACAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45015885	mCV23624410	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss146399287	ENSMUSSNP1746192	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31281150					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181668390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1138	CpG island 1138	667 bp proximal
Gm55354	predicted gene, 55354	257 bp upstream
Lbr	lamin B receptor	within coordinates
Rr396678	regulatory region 396678	1396 bp upstream
Rr424801	regulatory region 424801	569 bp distal
Rr424802	regulatory region 424802	211 bp distal
Rr424803	regulatory region 424803	209 bp proximal
Rr424804	regulatory region 424804	1544 bp proximal
Rr424805	regulatory region 424805	1741 bp proximal
Tssr10531	transcription start site region 10531	1690 bp upstream
Tssr10532	transcription start site region 10532	1726 bp upstream
Tssr15588	transcription start site region 15588	188 bp downstream
Tssr15589	transcription start site region 15589	1482 bp downstream
Tssr15590	transcription start site region 15590	1509 bp downstream