rs31281187 SNP Detail

Summary

• ID
  rs31281187
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160760872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGGTCA TGCAGGGCTC
  TTGCATGTGC TAGGGAGGGT GCAATCTGTC AGGCTCTGGA AAATGCGTAC AACCCTGTAG
  CTATAGTGGC TGCACTTACA GGTTATCAAA CCAGATAGTT TTAACACATA CATACAGGGG
  GCACCTGCAG AGGAATATCA CTACAGTCTC TAAAAGCAAC AAGTTAAAAA TAGCCTAAAC
  W
  TCAGAACTGA TTCACTGTGT TGTCTATACC AGAGAGTTAT TAGACATTTA CAGATATCAC
  CACAAATCTA TTGCAAAAAC AAAGTTTTTT TTTTTTTTTT TTTTTTTTGG TTTTTCGAGA
  CAGGACTTTT CTGTGTAGCC TTGGCTGTCC TGGAACTCAC TCTGTAGACC AGGTTGGCCT
  CGAACTCAGA AATCCGCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45015529	mCV24552645	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					A		A
ss60334368	NES15826000	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	A		A		A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31281187					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60334368	NES15826000	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160760872 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	703 bp proximal
Rr421729	regulatory region 421729	716 bp proximal
Rr421730	regulatory region 421730	1013 bp proximal
Rr421731	regulatory region 421731	1250 bp proximal