rs31281624 SNP Detail

Summary

• ID
  rs31281624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103684511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA GTTACAGTTC TATCCTATGC
  R
  TGTTAAGCAC AGTATTTTGT ACTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45517197	mCV22763087	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss46826969	NES10716903	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		A	G	A	A		A	A		A
ss135564172	ENSMUSSNP6877233	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss320858426	CHEV_3_103581118	CHEVERUD	SCREENING_POP	f	SNP													A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31281624					SNP	A	A	A	A	A	G	A	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46826969	NES10716903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103684511 () rs orientation: forward

Symbol	Name	Function Class
Gm15886	predicted gene 15886	within coordinates
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr69881	regulatory region 69881	1111 bp distal
Rr69882	regulatory region 69882	90 bp proximal
Rr367513	regulatory region 367513	804 bp upstream
Tssr34850	transcription start site region 34850	384 bp upstream
Tssr34851	transcription start site region 34851	940 bp downstream
Tssr34852	transcription start site region 34852	961 bp downstream
Tssr34853	transcription start site region 34853	993 bp downstream
Tssr34854	transcription start site region 34854	1062 bp downstream
Tssr34855	transcription start site region 34855	1114 bp downstream