rs31282571 SNP Detail

Summary

• ID
  rs31282571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87753333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAAACCAC GCTTCCCTCA AACTCAGATA TCCCCCTGCC
  TCTGCCTTCT GAGTGCTGGG CCTGGGATAA AAGATATGCT GTCTTTTGCA TTTCTAAATA
  Y
  TGTTAAATAC TTTGGTGTAG GTCATAGGAT CTGGTTTCCT GGGTAGATGC CAAAAGATGC
  AGAAGACCCT GCCTGTCCAG TATACCCTGC CTCTGGTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45517216	mCV23485259	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135468457	ENSMUSSNP909771	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320835407	CHEV_3_87649948	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31282571					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87753333 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	847 bp upstream
Rr579558	regulatory region 579558	1860 bp distal
Rr579559	regulatory region 579559	239 bp proximal
Sh2d2a	SH2 domain containing 2A	729 bp upstream
Tssr29832	transcription start site region 29832	727 bp downstream
Tssr29833	transcription start site region 29833	699 bp upstream
Tssr29834	transcription start site region 29834	752 bp upstream
Tssr29835	transcription start site region 29835	814 bp upstream
Tssr29836	transcription start site region 29836	855 bp upstream
Tssr29837	transcription start site region 29837	962 bp upstream
Tssr29838	transcription start site region 29838	978 bp upstream
Tssr29839	transcription start site region 29839	1110 bp upstream
Tssr33958	transcription start site region 33958	563 bp downstream
Tssr33959	transcription start site region 33959	761 bp downstream
Tssr33960	transcription start site region 33960	858 bp downstream